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  • Negative cofitness for PS417_22700 from Pseudomonas simiae WCS417

    RNA polymerase subunit sigma-24
    SEED: FIG006045: Sigma factor, ECF subfamily

    Computing cofitness values with 552 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PS417_04105 ABC transporter ATP-binding protein -0.55
    2 PS417_17300 RND transporter -0.48
    3 PS417_17290 RND transporter -0.43
    4 PS417_17295 RND transporter MFP subunit -0.42
    5 PS417_11820 histidine kinase -0.38
    6 PS417_17285 hypothetical protein -0.36
    7 PS417_26715 peptidase P60 -0.33
    8 PS417_17785 4-amino-4-deoxy-L-arabinose transferase -0.33
    9 PS417_14560 TonB-dependent receptor -0.32
    10 PS417_04690 transcriptional regulator -0.32
    11 PS417_13790 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase -0.28
    12 PS417_05110 peptidase -0.28
    13 PS417_09225 C4-dicarboxylate ABC transporter -0.28
    14 PS417_20115 hypothetical protein -0.27
    15 PS417_28135 sodium:alanine symporter -0.26
    16 PS417_11825 transcriptional regulator -0.26
    17 PS417_21515 transcriptional regulator -0.26
    18 PS417_13820 UDP-glucose 6-dehydrogenase -0.24
    19 PS417_22305 histidine kinase -0.23
    20 PS417_13795 UDP-4-amino-4-deoxy-L-arabinose formyltransferase -0.23

    Or look for positive cofitness