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  • Negative cofitness for GFF4433 from Variovorax sp. SCN45

    1,6-anhydro-N-acetylmuramyl-L-alanine amidase
    SEED: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD
    KEGG: AmpD protein

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF2417 putative amidase -0.64
    2 GFF6777 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) -0.61
    3 GFF101 Phosphate-binding DING protein (related to PstS) -0.60
    4 GFF6669 hypothetical protein -0.59
    5 GFF3543 no description -0.58
    6 GFF5451 Membrane-bound lytic murein transglycosylase A -0.58
    7 GFF6623 Esterase/lipase -0.57
    8 GFF4825 SWIB/MDM2 domain-containing proteins -0.56
    9 GFF4292 no description -0.56
    10 GFF2107 no description -0.55
    11 GFF819 Uncharacterized protein CC_2099 -0.55
    12 GFF2192 FIG00932626: hypothetical protein -0.54
    13 GFF2381 Ribonuclease PH (EC 2.7.7.56) -0.54
    14 GFF5256 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) -0.54
    15 GFF2441 RND efflux system, inner membrane transporter -0.53
    16 GFF5404 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) -0.53
    17 GFF3545 hypothetical protein -0.53
    18 GFF640 no description -0.53
    19 GFF1850 Tetracenomycin polyketide synthesis O-methyltransferase TcmP -0.52
    20 GFF740 Uncharacterized protein YdcJ -0.52

    Or look for positive cofitness