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  • Negative cofitness for GFF4432 from Variovorax sp. SCN45

    Two-component system response regulator protein
    SEED: Sigma-54 dependent transcriptional regulator
    KEGG: two-component system, NtrC family, response regulator PilR

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF3917 Ferrous iron transporter FeoB -0.78
    2 GFF5288 Uncharacterized protein PA4513 -0.72
    3 GFF3893 hypothetical protein -0.71
    4 GFF531 hypothetical protein -0.70
    5 GFF3931 Protein sirB1 -0.69
    6 GFF5860 no description -0.68
    7 GFF5002 ABC-type branched-chain amino acid transport systems, periplasmic component -0.68
    8 GFF3920 FIG00467295: hypothetical protein -0.67
    9 GFF3261 FIG003003: hypothetical protein -0.67
    10 GFF2505 hypothetical protein -0.66
    11 GFF256 Twitching motility protein PilT -0.65
    12 GFF2152 twitching motility protein PilH -0.63
    13 GFF2506 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) -0.63
    14 GFF5855 T1SS secreted agglutinin RTX -0.62
    15 GFF976 no description -0.62
    16 GFF5408 Protein serine/threonine phosphatase PrpC, regulation of stationary phase -0.62
    17 GFF5341 Efflux ABC transporter, permease protein -0.62
    18 GFF5429 Iron(III) dicitrate transport protein FecA -0.62
    19 GFF3877 Uncharacterized chaperone protein YegD -0.61
    20 GFF2354 FIG00555615: hypothetical protein -0.60

    Or look for positive cofitness