Negative cofitness for GFF4388 from Variovorax sp. SCN45

Type IV secretory pathway, protease TraF
SEED: Type IV secretory pathway, protease TraF

Computing cofitness values with 61 experiments...

Genes with the strongest negative cofitness:

Rank Hit Name Description Cofit  
1 GFF5722 Flagellar P-ring protein FlgI -0.60
2 GFF6031 Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1) -0.60
3 GFF6273 Nicotinamide-nucleotide amidase (EC 3.5.1.42) -0.60
4 GFF6581 Coupling protein VirD4, ATPase required for T-DNA transfer -0.59
5 GFF3431 Glutaryl-CoA dehydrogenase (EC 1.3.8.6) -0.58
6 GFF1237 Methionine sulfoxide reductase cytochrome b subunit -0.58
7 GFF271 2-methylcitrate synthase (EC 2.3.3.5) -0.57
8 GFF2714 2-ketogluconate utilization repressor PtxS -0.57
9 GFF5331 Transposase and inactivated derivatives -0.57
10 GFF6401 Formiminoglutamic iminohydrolase (EC 3.5.3.13) -0.57
11 GFF6224 T6SS component TssK (ImpJ/VasE) -0.57
12 GFF4908 NAD(P) transhydrogenase N-domain of subunit alpha (EC 1.6.1.2) -0.57
13 GFF719 no description -0.57
14 GFF273 Transcriptional regulator, Xre family -0.56
15 GFF5451 Membrane-bound lytic murein transglycosylase A -0.56
16 GFF5823 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) -0.56
17 GFF1891 Transcriptional regulator, GntR family -0.56
18 GFF5707 Transcriptional regulator, LysR family -0.55
19 GFF5672 Dna binding response regulator PrrA (RegA) -0.55
20 GFF5640 Putative formate dehydrogenase oxidoreductase protein -0.55

Or look for positive cofitness