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  • Negative cofitness for GFF4168 from Variovorax sp. SCN45

    ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines)
    SEED: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)
    KEGG: peptide/nickel transport system permease protein

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF2599 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) -0.56
    2 GFF6739 Putative diheme cytochrome c-553 -0.52
    3 GFF4455 TonB protein -0.52
    4 GFF5249 Protein YhfA -0.52
    5 GFF4620 Gluconolactonase (EC 3.1.1.17) -0.51
    6 GFF123 Dihydroorotate dehydrogenase (NAD(+)), catalytic subunit (EC 1.3.1.14) -0.51
    7 GFF3166 Transcriptional regulator, IclR family -0.51
    8 GFF524 Tripartite tricarboxylate transporter TctB family -0.50
    9 GFF696 Glycosyl transferase, group 2 family -0.50
    10 GFF6516 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) -0.49
    11 GFF812 Putative reductase -0.47
    12 GFF1130 Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase) -0.47
    13 GFF6341 no description -0.47
    14 GFF6824 Pyruvate:Oxaloacetate transcarboxylase domain protein -0.47
    15 GFF5243 General secretion pathway protein H -0.46
    16 GFF5100 putative membrane protein -0.46
    17 GFF5948 hypothetical protein -0.46
    18 GFF5582 BUG/TctC family periplasmic protein -0.46
    19 GFF2678 Glycerol-3-phosphate regulon repressor GlpR -0.45
    20 GFF1096 Phosphate transport system regulatory protein PhoU -0.45

    Or look for positive cofitness