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  • Negative cofitness for GFF4154 from Variovorax sp. SCN45

    ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate)
    SEED: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF1010 hypothetical protein -0.62
    2 GFF6271 Phosphatidylglycerophosphatase A (EC 3.1.3.27) -0.60
    3 GFF6807 BUG/TctC family periplasmic protein -0.58
    4 GFF378 RNA (nucleoside 2'-O)-methyltransferase -0.58
    5 GFF640 no description -0.57
    6 GFF3713 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) -0.57
    7 GFF5843 hypothetical protein -0.57
    8 GFF3433 hypothetical protein -0.55
    9 GFF5127 no description -0.55
    10 GFF1383 Hypothetical protein in cluster with At3g50560-like gene family -0.55
    11 GFF6014 Transcriptional regulator, LysR family -0.54
    12 GFF6858 no description -0.54
    13 GFF4378 HYPOTHETICAL/UNKNOWN PROTEIN -0.54
    14 GFF7172 Manganese transport protein MntH -0.54
    15 GFF4972 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) -0.53
    16 GFF1393 hypothetical protein -0.53
    17 GFF2237 Intracellular protease -0.53
    18 GFF928 tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) -0.53
    19 GFF1681 Methylisocitrate lyase (EC 4.1.3.30) -0.53
    20 GFF3578 Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) -0.53

    Or look for positive cofitness