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  • Negative cofitness for PS417_20955 from Pseudomonas simiae WCS417

    secretion protein
    SEED: Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)
    KEGG: type III secretion protein SctC

    Computing cofitness values with 552 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PS417_00335 cytochrome B561 -0.58
    2 PS417_00305 cytochrome oxidase subunit I -0.57
    3 PS417_00300 cytochrome B559 subunit alpha -0.51
    4 PS417_25835 hypothetical protein -0.50
    5 PS417_14920 CoA-transferase -0.49
    6 PS417_04340 ribosome hibernation promoting factor HPF -0.46
    7 PS417_01710 histidine utilization repressor -0.46
    8 PS417_25840 SpoVR family protein -0.46
    9 PS417_27535 chemotaxis protein CheY -0.46
    10 PS417_13795 UDP-4-amino-4-deoxy-L-arabinose formyltransferase -0.44
    11 PS417_03310 carbonate dehydratase -0.42
    12 PS417_16005 ATPase -0.42
    13 PS417_16990 acyl-CoA dehydrogenase -0.41
    14 PS417_13800 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase -0.41
    15 PS417_22125 porin -0.41
    16 PS417_25790 aminoglycoside phosphotransferase -0.39
    17 PS417_23890 ATPase -0.39
    18 PS417_08455 universal stress protein UspA -0.39
    19 PS417_22780 XRE family transcriptional regulator -0.39
    20 PS417_13820 UDP-glucose 6-dehydrogenase -0.38

    Or look for positive cofitness