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  • Negative cofitness for GFF3821 from Variovorax sp. SCN45

    RND efflux system, inner membrane transporter
    SEED: RND efflux system, inner membrane transporter CmeB
    KEGG: hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF3787 Biotin carboxylase (EC 6.3.4.14) -0.57
    2 GFF2466 no description -0.55
    3 GFF211 protein of unknown function UPF0125 -0.54
    4 GFF3999 GMP reductase (EC 1.7.1.7) -0.54
    5 GFF5266 Transaldolase (EC 2.2.1.2) -0.54
    6 GFF2105 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) -0.52
    7 GFF2285 Transcriptional regulator, RpiR family -0.52
    8 GFF3710 Lactoylglutathione lyase and related lyases -0.51
    9 GFF5249 Protein YhfA -0.51
    10 GFF4273 BUG/TctC family periplasmic protein -0.51
    11 GFF6947 transcriptional regulator, Crp/Fnr family -0.50
    12 GFF845 dTDP-glucose 4,6-dehydratase -0.50
    13 GFF3359 Predicted transcriptional regulator for fatty acid degradation FadP, TetR family -0.49
    14 GFF5116 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD -0.49
    15 GFF6715 Transcriptional regulator of RpiR family in catabolic operon -0.49
    16 GFF314 Acyltransferase -0.49
    17 GFF3221 hypothetical protein -0.48
    18 GFF4208 BUG/TctC family periplasmic protein -0.48
    19 GFF3444 BUG/TctC family periplasmic protein -0.48
    20 GFF3488 Transcriptional regulator, GntR family -0.48

    Or look for positive cofitness