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  • Negative cofitness for PS417_19555 from Pseudomonas simiae WCS417

    RNA polymerase sigma70
    SEED: Sigma factor PvdS, controling pyoverdin biosynthesis
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Computing cofitness values with 552 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PS417_11705 cyclic peptide transporter -0.36
    2 PS417_13265 peptide synthetase -0.33
    3 PS417_09585 acetyltransferase -0.33
    4 PS417_09600 glycosyl transferase family 1 -0.32
    5 PS417_02870 TonB-dependent receptor -0.30
    6 PS417_09590 membrane protein -0.30
    7 PS417_13285 TonB-dependent receptor -0.29
    8 PS417_13260 pyochelin synthetase -0.28
    9 PS417_13270 lipoprotein -0.28
    10 PS417_09595 membrane protein -0.28
    11 PS417_23915 pantoate--beta-alanine ligase -0.25
    12 PS417_21420 aminodeoxychorismate lyase -0.25
    13 PS417_04020 glycine/betaine ABC transporter substrate-binding protein -0.25
    14 PS417_13290 AraC family transcriptional regulator -0.25
    15 PS417_02865 peptidase -0.24
    16 PS417_04010 glycine/betaine ABC transporter ATP-binding protein -0.23
    17 PS417_08920 branched-chain amino acid ABC transporter substrate-binding protein -0.23
    18 PS417_12935 RNA polymerase sigma factor -0.23
    19 PS417_18715 peptidase M4 -0.23
    20 PS417_19955 hypothetical protein -0.23

    Or look for positive cofitness