Negative cofitness for GFF3596 from Variovorax sp. SCN45

TRAP-type C4-dicarboxylate transport system, large permease component
SEED: TRAP-type C4-dicarboxylate transport system, large permease component

Computing cofitness values with 61 experiments...

Genes with the strongest negative cofitness:

Rank Hit Name Description Cofit  
1 GFF3029 T6SS component TssM (IcmF/VasK) -0.61
2 GFF2038 ABC transporter, substrate-binding protein (cluster 7, di-/tri-carboxylate) -0.56
3 GFF4307 ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) -0.56
4 GFF7262 no description -0.55
5 GFF246 Transmembrane protein Msl3831 -0.55
6 GFF1341 ABC transporter, ATP-binding protein 2 RSc1754 -0.53
7 GFF3801 Response regulator receiver protein -0.53
8 GFF747 Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8) -0.51
9 GFF1420 Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8) -0.50
10 GFF767 Alpha-amylase (EC 3.2.1.1) -0.49
11 GFF1923 ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) -0.49
12 GFF1513 Cytochrome c551/c552 -0.49
13 GFF5164 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) -0.49
14 GFF6800 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) -0.48
15 GFF4374 UPF0758 family protein -0.48
16 GFF5601 Predicted hydrolase of the alpha/beta-hydrolase fold -0.47
17 GFF4459 Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) -0.47
18 GFF512 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) -0.47
19 GFF6516 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) -0.47
20 GFF4981 Cysteine desulfurase (EC 2.8.1.7) -0.47

Or look for positive cofitness