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  • Negative cofitness for GFF3530 from Variovorax sp. SCN45

    Pseudouridine synthase
    SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
    KEGG: ribosomal large subunit pseudouridine synthase F

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF3486 glutamine synthetase family protein -0.59
    2 GFF7028 Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC -0.57
    3 GFF1117 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) -0.54
    4 GFF2491 Threonine-synthase-like protein 3 -0.53
    5 GFF5127 no description -0.53
    6 GFF3575 no description -0.53
    7 GFF6364 VgrG protein -0.51
    8 GFF3058 Demethylmenaquinone methyltransferase-like protein -0.49
    9 GFF1199 Uncharacterized protein similar to glutamate-1-semialdehyde aminotransferase -0.49
    10 GFF3793 no description -0.48
    11 GFF2249 no description -0.48
    12 GFF6415 ATP-dependent DNA helicase RecQ -0.48
    13 GFF4516 hypothetical protein -0.47
    14 GFF2981 no description -0.46
    15 GFF5500 hypothetical protein -0.46
    16 GFF6276 Uncharacterized MFS-type transporter -0.46
    17 GFF5601 Predicted hydrolase of the alpha/beta-hydrolase fold -0.45
    18 GFF3959 Uncharacterized integral membrane endopeptidase Bmul_2226 -0.45
    19 GFF723 RNA polymerase ECF-type sigma factor -0.44
    20 GFF5912 Two-component transcriptional response regulator, LuxR family, but with unusual receiver domain -0.44

    Or look for positive cofitness