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  • Negative cofitness for GFF3463 from Variovorax sp. SCN45

    Urea ABC transporter, permease protein UrtB
    SEED: Urea ABC transporter, permease protein UrtB
    KEGG: branched-chain amino acid transport system permease protein

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF2121 Type IV fimbrial biogenesis protein PilY1 -0.46
    2 GFF4377 putative plasmid stabilization protein -0.46
    3 GFF3503 Subclass B3 beta-lactamase (EC 3.5.2.6) -0.44
    4 GFF6548 hypothetical protein -0.44
    5 GFF1691 Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake -0.44
    6 GFF6460 Sensor protein BasS/PmrB (activates BasR/PmrA) -0.44
    7 GFF4012 hypothetical protein -0.44
    8 GFF1234 Peptide-methionine (S)-S-oxide reductase MsrA (EC 1.8.4.11) -0.44
    9 GFF3571 hypothetical protein -0.44
    10 GFF2676 Dialkylrecorsinol condensing enzyme -0.43
    11 GFF5252 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) -0.43
    12 GFF801 Murein hydrolase activator NlpD -0.43
    13 GFF1222 Methylglyoxal synthase (EC 4.2.3.3) -0.43
    14 GFF2490 Transcriptional regulator, LysR family -0.42
    15 GFF4074 Multicopper oxidase -0.42
    16 GFF2939 hypothetical protein -0.42
    17 GFF7078 no description -0.42
    18 GFF3205 no description -0.42
    19 GFF1303 Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) -0.41
    20 GFF880 conserved hypothetical protein -0.41

    Or look for positive cofitness