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  • Negative cofitness for PS417_17680 from Pseudomonas simiae WCS417

    ABC transporter
    SEED: Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)
    KEGG: branched-chain amino acid transport system ATP-binding protein

    Computing cofitness values with 552 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PS417_22580 membrane protein -0.22
    2 PS417_04525 16S rRNA methyltransferase -0.20
    3 PS417_02645 aldehyde dehydrogenase -0.19
    4 PS417_26170 formyltetrahydrofolate deformylase -0.18
    5 PS417_13670 protease -0.18
    6 PS417_17170 carbon-nitrogen hydrolase -0.18
    7 PS417_10665 hypothetical protein -0.17
    8 PS417_20415 reverse transcriptase -0.17
    9 PS417_16055 biopolymer transporter TolR -0.17
    10 PS417_04920 GntR family transcriptional regulator -0.17
    11 PS417_23770 exodeoxyribonuclease V subunit alpha -0.17
    12 PS417_13405 helicase UvrD -0.17
    13 PS417_15860 chromate transporter -0.16
    14 PS417_19400 amino acid transporter LysE -0.16
    15 PS417_24155 ATP-binding protein -0.16
    16 PS417_28260 VdlD -0.16
    17 PS417_03945 chemotaxis protein -0.16
    18 PS417_18400 D-ribose ABC transporter, ATPase component RbsA (from data) -0.16
    19 PS417_27920 type VI secretion protein IcmF -0.16
    20 PS417_26100 amino acid ABC transporter -0.16

    Or look for positive cofitness