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  • Negative cofitness for GFF3174 from Variovorax sp. SCN45

    Oxidoreductase, GMC family
    SEED: Choline dehydrogenase (EC 1.1.99.1)
    KEGG: choline dehydrogenase

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF2324 Lactam utilization protein LamB -0.54
    2 GFF5958 FIG00537018: hypothetical protein -0.54
    3 GFF6337 Ser/Thr protein phosphatase family protein -0.54
    4 GFF2267 Integral membrane protein -0.53
    5 GFF6562 T1SS secreted agglutinin RTX -0.53
    6 GFF5286 Ferrichrome-iron receptor -0.53
    7 GFF6840 Putative transmembrane protein -0.53
    8 GFF5295 Ferrichrome-iron receptor -0.50
    9 GFF7243 HtrA protease/chaperone protein -0.49
    10 GFF5175 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.5.2) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) -0.48
    11 GFF6332 Maltodextrin glucosidase (EC 3.2.1.20) -0.47
    12 GFF3179 hypothetical protein -0.46
    13 GFF5308 Epoxide hydrolase (EC 3.3.2.9) -0.45
    14 GFF3537 Transcriptional regulator, LysR family -0.45
    15 GFF6659 Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB (RND type) -0.45
    16 GFF111 hypothetical protein -0.45
    17 GFF4209 no description -0.44
    18 GFF1930 RTX toxin transporter, ATP-binding protein -0.44
    19 GFF4906 hypothetical protein -0.44
    20 GFF5327 Uncharacterized MFS-type transporter -0.44

    Or look for positive cofitness