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  • Negative cofitness for GFF3074 from Sphingobium sp. HT1-2

    LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24)
    SEED: Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)
    KEGG: ribosomal large subunit pseudouridine synthase C

    Computing cofitness values with 18 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF3353 hypothetical protein -0.79
    2 GFF2245 Thioesterase superfamily -0.76
    3 GFF3441 hypothetical protein -0.76
    4 GFF2913 hypothetical protein -0.76
    5 GFF252 hypothetical protein -0.76
    6 GFF4633 Broad-specificity glycerol dehydrogenase (EC 1.1.99.22), subunit SldA -0.72
    7 GFF1892 Nucleoside-diphosphate-sugar epimerase -0.71
    8 GFF1016 Mandelate racemase /muconate lactonizing enzyme related protein (MR/MLE) -0.71
    9 GFF1944 hypothetical protein -0.69
    10 GFF1244 DNA-binding domain of ModE -0.69
    11 GFF3847 Tas protein, an NADP(H)-dependent aldo-keto reductase -0.68
    12 GFF3502 Two-component system sensor histidine kinase -0.68
    13 GFF5151 RNA polymerase ECF-type sigma factor -0.68
    14 GFF4988 Prolyl oligopeptidase family protein -0.68
    15 GFF4112 hypothetical protein -0.68
    16 GFF4644 Oxidoreductase, short-chain dehydrogenase/reductase family -0.68
    17 GFF2968 hypothetical protein -0.67
    18 GFF284 Insertion element IS401 (Burkholderia multivorans) transposase -0.66
    19 GFF5268 hypothetical protein -0.66
    20 GFF2558 Peptidase, M23/M37 family -0.66

    Or look for positive cofitness