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  • Negative cofitness for GFF2885 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF4129 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) -0.60
    2 GFF3261 FIG003003: hypothetical protein -0.58
    3 GFF6657 Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system -0.57
    4 GFF178 Mannonate dehydratase (EC 4.2.1.8) -0.57
    5 GFF5271 Transcriptional regulator, LysR family -0.56
    6 GFF5430 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB -0.56
    7 GFF606 BUG/TctC family periplasmic protein -0.56
    8 GFF4853 Transcriptional regulator, LysR family -0.55
    9 GFF1004 Putative inner membrane protein YjeT (clustered with HflC) -0.55
    10 GFF3013 KEGG: type VI secretion system secreted protein Hcp -0.55
    11 GFF5403 no description -0.55
    12 GFF1017 conserved hypothetical protein-transmembrane prediction -0.54
    13 GFF7310 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA -0.53
    14 GFF5817 Two-component system sensor histidine kinase -0.53
    15 GFF202 Transcriptional regulator, LysR family -0.53
    16 GFF3827 UPF0118 membrane protein SMc00793 -0.53
    17 GFF5209 DUF1854 domain-containing protein -0.52
    18 GFF5906 Nitrilase (EC 3.5.5.7) -0.52
    19 GFF7273 UDP-glucose 4-epimerase (EC 5.1.3.2) -0.51
    20 GFF4902 hypothetical protein -0.51

    Or look for positive cofitness