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  • Negative cofitness for GFF2722 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator, LysR family

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF3647 Cytochrome b -0.62
    2 GFF918 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) -0.62
    3 GFF1391 Uncharacterized MFS-type transporter -0.55
    4 GFF4728 Two-component system sensor histidine kinase -0.55
    5 GFF20 hypothetical protein -0.54
    6 GFF24 VgrG protein -0.51
    7 GFF476 InterPro IPR005134 COGs COG2862 -0.51
    8 GFF6045 FIG00932121: hypothetical protein -0.49
    9 GFF6453 Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein -0.49
    10 GFF6937 Membrane protein -0.49
    11 GFF7093 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) -0.49
    12 GFF5095 hypothetical protein -0.48
    13 GFF3114 Methionine ABC transporter ATP-binding protein -0.48
    14 GFF2865 Uncharacterized MFS-type transporter -0.47
    15 GFF7082 TnpA transposase -0.47
    16 GFF1208 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) -0.47
    17 GFF4139 probable epoxide hydrolase -0.46
    18 GFF3658 hypothetical protein -0.45
    19 GFF6099 Ser/Thr protein phosphatase family protein -0.45
    20 GFF3691 ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) -0.44

    Or look for positive cofitness