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  • Negative cofitness for GFF2720 from Variovorax sp. SCN45

    ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines)
    SEED: polar amino acid ABC transporter, inner membrane subunit
    KEGG: polar amino acid transport system permease protein

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF552 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) -0.53
    2 GFF1177 Serine protease -0.51
    3 GFF3880 Cell division integral membrane protein, YggT and half-length relatives -0.51
    4 GFF4938 no description -0.50
    5 GFF379 Ribonuclease HII (EC 3.1.26.4) -0.49
    6 GFF5533 hypothetical protein -0.48
    7 GFF3819 hypothetical protein -0.47
    8 GFF5329 SAM-dependent methyltransferase -0.47
    9 GFF2114 3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type -0.45
    10 GFF4503 RNA polymerase sigma factor -0.45
    11 GFF1925 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases -0.45
    12 GFF4799 hypothetical protein -0.45
    13 GFF419 hypothetical protein -0.44
    14 GFF3307 FIG01161751: hypothetical protein -0.43
    15 GFF7345 Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT -0.43
    16 GFF6815 FIG00453801: hypothetical protein -0.43
    17 GFF6010 MmgE/PrpD family protein -0.43
    18 GFF1533 no description -0.43
    19 GFF245 Aspartate aminotransferase (EC 2.6.1.1) -0.43
    20 GFF2827 Bacterioferritin (EC 1.16.3.1) -0.42

    Or look for positive cofitness