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  • Negative cofitness for GFF175 from Variovorax sp. SCN45

    ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines)
    SEED: ABC transporter permease protein

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF4993 putative tetratricopeptide repeat family protein -0.62
    2 GFF6931 no description -0.60
    3 GFF5847 putative membrane protein -0.53
    4 GFF4884 UPF0380 proteins YafZ and homologs -0.52
    5 GFF6342 Mobile element protein -0.51
    6 GFF1144 hypothetical protein -0.51
    7 GFF7215 Transcriptional regulator, LysR family -0.50
    8 GFF4388 Type IV secretory pathway, protease TraF -0.49
    9 GFF3348 Putative lipase -0.49
    10 GFF7107 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases -0.49
    11 GFF4648 Inner-membrane proton/drug antiporter (MSF type) of tripartite multidrug efflux system -0.48
    12 GFF5044 ABC transporter, ATP-binding protein (cluster 9, phospholipid) -0.48
    13 GFF6337 Ser/Thr protein phosphatase family protein -0.48
    14 GFF2488 Two-component transcriptional response regulator, LuxR family -0.48
    15 GFF4204 Oxidoreductase, short-chain dehydrogenase/reductase family -0.48
    16 GFF1178 hypothetical protein -0.48
    17 GFF6989 Flagellar basal-body rod modification protein FlgD -0.48
    18 GFF5102 BUG/TctC family periplasmic protein -0.47
    19 GFF185 hypothetical protein -0.47
    20 GFF809 Acetyl-CoA acetyltransferase (EC 2.3.1.9) -0.47

    Or look for positive cofitness