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  • Negative cofitness for GFF1743 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF5288 Uncharacterized protein PA4513 -0.52
    2 GFF3849 Iron-sulfur cluster-binding protein, Rieske family -0.52
    3 GFF7320 tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) -0.52
    4 GFF330 Nucleoside ABC transporter, permease protein 1 -0.49
    5 GFF4869 Type IV secretory pathway, protease TraF -0.49
    6 GFF5341 Efflux ABC transporter, permease protein -0.48
    7 GFF5022 FIG011065: hypothetical protein -0.48
    8 GFF1177 Serine protease -0.48
    9 GFF3931 Protein sirB1 -0.47
    10 GFF1029 CHRD domain containing protein -0.47
    11 GFF306 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase -0.47
    12 GFF4291 Putative oxidoreductase YncB -0.46
    13 GFF1025 Chromate transport protein ChrA -0.46
    14 GFF4317 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) -0.46
    15 GFF969 ATP-dependent protease HslVU (ClpYQ), peptidase subunit -0.46
    16 GFF5691 Glutamate/aspartate ABC transporter, permease protein GltK (TC 3.A.1.3.4) -0.45
    17 GFF974 hypothetical protein -0.45
    18 GFF531 hypothetical protein -0.45
    19 GFF5862 KEGG: RNA polymerase sigma-70 factor, ECF subfamily -0.45
    20 GFF4814 Conserved hypothetical protein potentially related to ribose or hydroxymethylpyrimidine metabolism -0.44

    Or look for positive cofitness