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  • Negative cofitness for GFF1524 from Variovorax sp. SCN45

    FIG006045: Sigma factor, ECF subfamily
    SEED: FIG006045: Sigma factor, ECF subfamily
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF5409 FIG00576366: hypothetical protein -0.67
    2 GFF6562 T1SS secreted agglutinin RTX -0.64
    3 GFF7371 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) -0.63
    4 GFF4252 hypothetical protein -0.62
    5 GFF6635 FIG00441227: hypothetical protein -0.62
    6 GFF7019 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) -0.60
    7 GFF6889 Alpha-aminoadipate aminotransferase (EC 2.6.1.39) @ Leucine transaminase (EC 2.6.1.6) @ Valine transaminase -0.59
    8 GFF7325 Glucans biosynthesis glucosyltransferase H -0.59
    9 GFF7374 FIG00984748: hypothetical protein -0.58
    10 GFF3730 Integral membrane protein -0.57
    11 GFF6086 Putative short-chain dehydrogenase -0.57
    12 GFF6034 Replication-associated recombination protein RarA -0.57
    13 GFF3852 Tetrapyrrole methylase family protein -0.57
    14 GFF3179 hypothetical protein -0.56
    15 GFF4955 hypothetical protein -0.56
    16 GFF6424 Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) -0.55
    17 GFF6020 UPF0246 protein YaaA -0.54
    18 GFF3668 hypothetical protein -0.54
    19 GFF4391 Acriflavin resistance protein -0.54
    20 GFF4980 Transcriptional regulator, AsnC family -0.54

    Or look for positive cofitness