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  • Negative cofitness for PS417_07085 from Pseudomonas simiae WCS417

    transcriptional regulator
    SEED: Tricarboxylate transport transcriptional regulator TctD
    KEGG: two-component system, OmpR family, response regulator TctD

    Computing cofitness values with 552 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PS417_05090 ferric citrate outer membrane transporter (fecA) (from data) -0.53
    2 PS417_22670 AraC family transcriptional regulator -0.26
    3 PS417_13375 LysR family transcriptional regulator -0.25
    4 PS417_14200 hypothetical protein -0.21
    5 PS417_05100 RNA polymerase sigma factor -0.18
    6 PS417_03160 metal ABC transporter ATPase -0.18
    7 PS417_05040 amino acid dehydrogenase -0.18
    8 PS417_17515 GfdT protein -0.16
    9 PS417_26650 histidine kinase -0.15
    10 PS417_26645 chemotaxis protein -0.15
    11 PS417_20445 hypothetical protein -0.14
    12 PS417_11900 conjugal transfer protein TraR -0.14
    13 PS417_17510 histidine kinase -0.14
    14 PS417_24585 AMP nucleosidase -0.14
    15 PS417_17065 catalase -0.14
    16 PS417_06085 2-methylisocitrate lyase -0.13
    17 PS417_08965 5-oxo-L-prolinase -0.13
    18 PS417_15260 protein phosphatase -0.13
    19 PS417_26055 cyclic nucleotide-binding protein -0.13
    20 PS417_27835 endoribonuclease -0.13

    Or look for positive cofitness