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  • Negative cofitness for PS417_00670 from Pseudomonas simiae WCS417

    RNA polymerase sigma factor
    SEED: FIG006045: Sigma factor, ECF subfamily
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Computing cofitness values with 552 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PS417_14220 aldehyde-activating protein -0.21
    2 PS417_07910 hypothetical protein -0.20
    3 PS417_07865 hypothetical protein -0.20
    4 PS417_27395 amino acid ABC transporter permease -0.19
    5 PS417_24385 tRNA (uracil-5-)-methyltransferase -0.19
    6 PS417_03335 MFS transporter -0.19
    7 PS417_04440 hypoxanthine-guanine phosphoribosyltransferase -0.18
    8 PS417_16885 hypothetical protein -0.18
    9 PS417_25170 FAD-binding protein -0.17
    10 PS417_26640 hypothetical protein -0.17
    11 PS417_04170 stringent starvation protein A -0.17
    12 PS417_03545 type III secretion protein -0.17
    13 PS417_24575 hypothetical protein -0.16
    14 PS417_01440 hypothetical protein -0.16
    15 PS417_07900 hypothetical protein -0.16
    16 PS417_17790 ABC transporter -0.16
    17 PS417_07870 hypothetical protein -0.16
    18 PS417_01030 glutamine ABC transporter substrate-binding protein -0.16
    19 PS417_08955 pimeloyl-CoA dehydrogenase -0.16
    20 PS417_25685 zinc-binding protein -0.15

    Or look for positive cofitness