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  • Negative cofitness for GFF115 from Variovorax sp. SCN45

    ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines)
    KEGG: polar amino acid transport system permease protein

    Computing cofitness values with 61 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 GFF1456 probable integrase/recombinase protein -0.53
    2 GFF6906 Transcriptional regulator, MarR family -0.52
    3 GFF3866 HtrA protease/chaperone protein -0.52
    4 GFF4185 RNA polymerase ECF-type sigma factor -0.50
    5 GFF3923 Kynurenine formamidase, bacterial (EC 3.5.1.9) -0.50
    6 GFF7292 ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog -0.49
    7 GFF4310 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) -0.48
    8 GFF6448 Glucans biosynthesis protein D precursor -0.48
    9 GFF3291 no description -0.47
    10 GFF538 FIG00454528: hypothetical protein -0.46
    11 GFF5211 Alkaline phosphatase (EC 3.1.3.1) -0.45
    12 GFF3718 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB (EC 3.5.1.110) -0.45
    13 GFF6590 Niacin transporter NiaP -0.44
    14 GFF1365 no description -0.44
    15 GFF259 Bis-ABC ATPase YheS -0.44
    16 GFF5651 hypothetical protein -0.43
    17 GFF4675 no description -0.43
    18 GFF274 Probable RNA methyltransferase PA1839 -0.42
    19 GFF5153 Putative ROK-family transcriptional regulator -0.42
    20 GFF1232 Uncharacterized protein conserved in bacteria -0.42

    Or look for positive cofitness