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  • Negative cofitness for Echvi_4327 from Echinicola vietnamensis KMM 6221, DSM 17526

    RNA polymerase sigma-70 factor, Bacteroides expansion family 1
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Computing cofitness values with 221 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 Echvi_2004 Predicted transcriptional regulator -0.37
    2 Echvi_3408 Nickel uptake substrate-specific transmembrane region. -0.36
    3 Echvi_4435 hypothetical protein -0.35
    4 Echvi_3420 Transcriptional regulator/sugar kinase -0.35
    5 Echvi_1154 monofunctional biosynthetic peptidoglycan transglycosylase -0.34
    6 Echvi_1407 hypothetical protein -0.34
    7 Echvi_1050 Uncharacterized conserved protein -0.33
    8 Echvi_1639 Endopolygalacturonase -0.33
    9 Echvi_1541 hypothetical protein -0.33
    10 Echvi_3976 hypothetical protein -0.32
    11 Echvi_3997 hypothetical protein -0.32
    12 Echvi_2486 hypothetical protein -0.32
    13 Echvi_2306 large conductance mechanosensitive channel protein -0.31
    14 Echvi_1586 hypothetical protein -0.31
    15 Echvi_2469 hypothetical protein -0.30
    16 Echvi_2653 Site-specific recombinase XerD -0.30
    17 Echvi_1266 putative solute:sodium symporter small subunit -0.30
    18 Echvi_2844 ABC-type multidrug transport system, ATPase component -0.29
    19 Echvi_1777 Multidrug resistance efflux pump -0.29
    20 Echvi_4404 nucleotide sugar dehydrogenase -0.29

    Or look for positive cofitness