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  • Negative cofitness for DZA65_RS01960 from Dickeya dianthicola ME23

    2-iminobutanoate/2-iminopropanoate deaminase
    SEED: Bona fide RidA/YjgF/TdcF/RutC subgroup
    KEGG: UPF0076 protein YjgF

    Computing cofitness values with 77 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 DZA65_RS15535 avirulence protein -0.51
    2 DZA65_RS10220 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM -0.43
    3 DZA65_RS11210 TetR family transcriptional regulator -0.39
    4 DZA65_RS07950 phosphonate metabolism transcriptional regulator PhnF -0.38
    5 DZA65_RS15030 baseplate J/gp47 family protein -0.38
    6 DZA65_RS04595 efflux RND transporter permease subunit -0.38
    7 DZA65_RS13065 aconitate hydratase AcnA -0.37
    8 DZA65_RS10150 APC family permease -0.37
    9 DZA65_RS07870 HTH-type transcriptional regulator Cbl -0.36
    10 DZA65_RS12930 YcjX family protein -0.35
    11 DZA65_RS14580 MBL fold metallo-hydrolase -0.35
    12 DZA65_RS12130 hypothetical protein -0.34
    13 DZA65_RS14350 DUF2857 domain-containing protein -0.34
    14 DZA65_RS09055 ABC transporter permease -0.34
    15 DZA65_RS21830 hypothetical protein -0.34
    16 DZA65_RS07765 hypochlorite stress DNA-binding transcriptional regulator HypT -0.33
    17 DZA65_RS03435 glycine cleavage system aminomethyltransferase GcvT -0.33
    18 DZA65_RS08090 DHA2 family efflux MFS transporter permease subunit -0.33
    19 DZA65_RS08905 YqaE/Pmp3 family membrane protein -0.33
    20 DZA65_RS20515 bacterioferritin -0.33

    Or look for positive cofitness