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Cofit
Protein
Homologs
Top cofit genes for PfGW456L13_4107 from
Pseudomonas fluorescens GW456-L13
CmpX
SEED: CmpX
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PfGW456L13
_5049
Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-)
0.52
0.53
2
PfGW456L13
_2847
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
no
0.46
3
PfGW456L13
_4935
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
0.70
0.42
4
PfGW456L13
_4924
Lysine 2,3-aminomutase (EC 5.4.3.2)
no
0.42
5
PfGW456L13
_2172
S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase
0.44
0.41
6
PfGW456L13
_578
Glutamate-aspartate carrier protein
0.37
0.41
7
PfGW456L13
_2855
CobN component of cobalt chelatase involved in B12 biosynthesis
no
0.41
8
PfGW456L13
_754
Phosphate transport system permease protein PstC (TC 3.A.1.7.1)
no
0.40
9
PfGW456L13
_4934
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
0.59
0.40
10
PfGW456L13
_2033
23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939
0.57
0.40
11
PfGW456L13
_5048
Dna binding response regulator PrrA (RegA)
0.61
0.40
12
PfGW456L13
_4253
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)
0.22
0.40
13
PfGW456L13
_4932
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
0.69
0.39
14
PfGW456L13
_4933
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
0.70
0.39
15
PfGW456L13
_1109
hypothetical protein
no
0.38
16
PfGW456L13
_4936
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
0.69
0.38
17
PfGW456L13
_859
Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives)
0.59
0.38
18
PfGW456L13
_2850
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
no
0.37
19
PfGW456L13
_1628
ATPase, AFG1 family
0.27
0.37
20
PfGW456L13
_65
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
no
0.37
Or look for
negative cofitness