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Cofit
Protein
Homologs
Top cofit genes for PfGW456L13_3892 from
Pseudomonas fluorescens GW456-L13
Integrase
SEED: Integrase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PfGW456L13
_773
Hydrogen peroxide-inducible genes activator
no
0.34
2
PfGW456L13
_4975
Transcriptional regulator, MerR family
no
0.33
3
PfGW456L13
_1302
Outer membrane protein W precursor
no
0.32
4
PfGW456L13
_7
ABC transporter ATP-binding protein
no
0.32
5
PfGW456L13
_4633
Isochorismatase (EC 3.3.2.1)
no
0.30
6
PfGW456L13
_3085
Hypothetical protein, restriction endonuclease-like VRR-NUC domain
no
0.30
7
PfGW456L13
_1703
Cyanate transport protein CynX
no
0.29
8
PfGW456L13
_739
Transcriptional regulator, AraC family
no
0.29
9
PfGW456L13
_5063
L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation
no
0.29
10
PfGW456L13
_772
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
no
0.29
11
PfGW456L13
_2977
Transcriptional regulator in custer with plant-induced nitrilase
no
0.29
12
PfGW456L13
_933
FIG00956490: hypothetical protein
no
0.28
13
PfGW456L13
_1570
hypothetical protein
no
0.28
14
PfGW456L13
_40
DNA-damage-inducible protein F
no
0.28
15
PfGW456L13
_4328
Signal transduction histidine kinase CheA (EC 2.7.3.-)
no
0.28
16
PfGW456L13
_2819
SOS-response repressor and protease LexA (EC 3.4.21.88)
no
0.27
17
PfGW456L13
_14
Nucleoside ABC transporter, periplasmic nucleoside-binding protein
no
0.27
18
PfGW456L13
_798
DNA repair protein RadC
no
0.27
19
PfGW456L13
_1536
FOG: TPR repeat
no
0.26
20
PfGW456L13
_792
hypothetical protein
no
0.26
Or look for
negative cofitness