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Cofit
Top cofit genes for PP_t49 from
Pseudomonas putida KT2440
tRNA-Met
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PP
_1655
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
no
0.58
2
PP
_1627
conserved protein of unknown function
no
0.54
3
PP
_1798
Outer membrane efflux protein
no
0.54
4
PP
_0066
Ribosomal RNA small subunit methyltransferase B
no
0.52
5
PP
_0540
conserved inner membrane protein
no
0.51
6
PP
_1803
UDP-sugar epimerase
no
0.49
7
PP
_1774
conserved exported protein of unknown function
no
0.48
8
PP
_3627
conserved protein of unknown function
no
0.48
9
PP
_1871
Protease HtpX
no
0.47
10
PP
_1326
16S rRNA 2'-O-ribose C1402 methyltransferase
no
0.47
11
PP
_1800
Oxidoreductase Rmd
no
0.46
12
PP
_1776
Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase
no
0.45
13
PP
_2148
transcription-repair coupling factor
no
0.45
14
PP
_1805
Polysaccharide biosynthesis protein
no
0.45
15
PP
_1801
Glycosyl transferase WbpY
no
0.45
16
PP
_2032
putative ATPase
no
0.45
17
PP
_5400
conserved protein of unknown function
no
0.45
18
PP
_1777
phosphomannomutase
no
0.45
19
PP
_1802
glycosyl transferase
no
0.43
20
PP
_1799
GDP-mannose 4,6-dehydratase
no
0.43
Or look for
negative cofitness