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  • Top cofit genes for PP_5719 from Pseudomonas putida KT2440

    choline-responsive transcriptional repressor BetI
    SEED: HTH-type transcriptional regulator BetI
    KEGG: TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_5262 Probable multidrug resistance protein NorM 0.29 0.45
    2 PP_4547 putative Glutamine synthetase no 0.42
    3 PP_0567 Biosynthetic arginine decarboxylase 0.24 0.36
    4 PP_4548 putative Oxidoreductase no 0.35
    5 PP_5212 Oxidoreductase, iron-sulfur-binding 0.36 0.34
    6 PP_2932 Amidase family protein no 0.31
    7 PP_0266 Agmatine deiminase 0.44 0.30
    8 PP_1842 Glutamine amidotransferase, class I 0.21 0.29
    9 PP_0711 putative hydrolase 0.33 0.25
    10 PP_5096 putative factor involved in shape determination no 0.24
    11 PP_1641 tRNA 2-thiocytidine biosynthesis protein TtcA no 0.22
    12 PP_3990 substrate or modulator of FtsH-mediated proteolysis no 0.22
    13 PP_4107 Transcriptional regulator, LysR family no 0.21
    14 PP_1758 putative sulfurtransferase containing rhodanese-like domain 0.35 0.21
    15 PP_3693 putative Transcriptional regulator MvaT, P16 subunit no 0.21
    16 PP_1087 Outer membrane protein, OmpA family no 0.20
    17 PP_3992 xanthine permease 0.66 0.20
    18 PP_5298 putative glutamine amidotransferase no 0.19
    19 PP_2181 Transcriptional regulator, Cro/CI family no 0.19
    20 PP_4872 putative enzyme of unknown function 0.65 0.19

    Or look for negative cofitness