Top cofit genes for PP_5558 from Pseudomonas putida KT2440

putative transcriptional xre family of phage origin

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_2784		Oxidoreductase, short-chain dehydrogenase/reductase family	no	0.21
2	PP_4157		two-component system DNA-binding response activator KdpE	no	0.21
3	PP_3420		Sensor histidine kinase	no	0.19
4	PP_2593		Ferric siderophore ABC transporter, permease protein	no	0.19
5	PP_1235		AhpC/TSA family protein	no	0.19
6	PP_4405		Sensory box protein	no	0.18
7	PP_2306		conserved exported protein of unknown function	no	0.18
8	PP_4968		DNA ligase B	no	0.17
9	PP_3711		diguanylate cyclase	no	0.17
10	PP_4841		putative Urea ABC transporter, periplasmic protein	no	0.16
11	PP_4206		Major facilitator family transporter	no	0.16
12	PP_4607		putative Transmembrane sensor	no	0.16
13	PP_1893		medium-long chain acyl-CoA dehydrogenase	no	0.16
14	PP_3171		conserved protein of unknown function	no	0.16
15	PP_4585		RNA methyltransferase, TrmH family	no	0.16
16	PP_2894		conserved protein of unknown function	no	0.16
17	PP_1229		putrescine permease	no	0.16
18	PP_2551		Transcriptional regulator, LysR family	no	0.16
19	PP_1708		Oxidoreductase, short chain dehydrogenase/reductase family	no	0.16
20	PP_2740		Transcriptional regulator, MerR family	no	0.15

Or look for negative cofitness