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  • Top cofit genes for PP_5352 from Pseudomonas putida KT2440

    DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex
    SEED: ATP-dependent DNA helicase UvrD/PcrA
    KEGG: DNA helicase II / ATP-dependent DNA helicase PcrA

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1629 Protein RecA 0.89 0.62
    2 PP_3248 Dyp-type peroxidase family protein 0.44 0.52
    3 PP_5310 junction-specific ATP-dependent DNA helicase 0.93 0.50
    4 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA 0.88 0.49
    5 PP_0002 probable chromosome partition protein 0.82 0.47
    6 PP_1217 Holliday junction ATP-dependent DNA helicase RuvB 0.88 0.46
    7 PP_0123 DNA polymerase I, 5 0.94 0.46
    8 PP_5230 Tyrosine recombinase XerC 0.83 0.45
    9 PP_4120 NADH-quinone oxidoreductase subunit B 0.52 0.44
    10 PP_4124 NADH-quinone oxidoreductase subunit G 0.57 0.44
    11 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.80 0.44
    12 PP_4121 NADH-quinone oxidoreductase subunit C/D 0.63 0.44
    13 PP_0691 Glutamate 5-kinase 0.57 0.43
    14 PP_4004 DNA translocase FtsK 0.78 0.43
    15 PP_1468 Tyrosine recombinase XerD 0.89 0.43
    16 PP_4129 NADH:ubiquinone oxidoreductase, membrane subunit L 0.47 0.42
    17 PP_1215 Crossover junction endodeoxyribonuclease RuvC 0.89 0.41
    18 PP_4131 NADH-quinone oxidoreductase subunit N 0.37 0.40
    19 PP_4799 putative Muramoyltetrapeptide carboxypeptidase no 0.39
    20 PP_4943 putative Glycosyl transferase 0.72 0.39

    Or look for negative cofitness