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  • Top cofit genes for PP_5338 from Pseudomonas putida KT2440

    aspartate ammonia-lyase
    SEED: Aspartate ammonia-lyase (EC 4.3.1.1)
    KEGG: aspartate ammonia-lyase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_5337 LysR family transcriptional regulator 0.98 0.64
    2 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.34 0.44
    3 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.42 0.43
    4 PP_0123 DNA polymerase I, 5 0.57 0.41
    5 PP_4546 ATP-dependent helicase HrpA 0.57 0.39
    6 PP_4988 signal transduction histidine kinase CheA/CheY-like receiver no 0.39
    7 PP_0214 4-aminobutyrate aminotransferase 0.57 0.38
    8 PP_1629 Protein RecA 0.34 0.37
    9 PP_0495 type 1 L-asparaginase 0.77 0.37
    10 PP_4124 NADH-quinone oxidoreductase subunit G 0.89 0.36
    11 PP_4121 NADH-quinone oxidoreductase subunit C/D 0.83 0.36
    12 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.80 0.36
    13 PP_4722 Transcription elongation factor GreA 0.78 0.35
    14 PP_1994 tRNA pseudouridine (38-40)synthase 0.32 0.34
    15 PP_4131 NADH-quinone oxidoreductase subunit N 0.84 0.34
    16 PP_4379 Beta-ketoacyl-acyl-carrier-protein synthase I 0.21 0.33
    17 PP_4880 exoribonuclease R 0.60 0.33
    18 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.59 0.33
    19 PP_4261 cation-transporting P-type ATPase 0.23 0.32
    20 PP_5310 junction-specific ATP-dependent DNA helicase 0.29 0.32

    Or look for negative cofitness