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  • Top cofit genes for PP_5294 from Pseudomonas putida KT2440

    Ribonuclease PH
    SEED: Ribonuclease PH (EC 2.7.7.56)
    KEGG: ribonuclease PH

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4880 exoribonuclease R 0.67 0.44
    2 PP_0123 DNA polymerase I, 5 0.63 0.44
    3 PP_0951 Ribosome hibernation promoting factor 0.75 0.43
    4 PP_5327 putative phosphate ABC transporter, permease subunit 0.79 0.42
    5 PP_4546 ATP-dependent helicase HrpA 0.81 0.42
    6 PP_4988 signal transduction histidine kinase CheA/CheY-like receiver no 0.41
    7 PP_4824 Sensor histidine kinase/response regulator 0.76 0.40
    8 PP_0498 conserved protein of unknown function no 0.40
    9 PP_1198 transcriptional regulator, Cro/CI family (higA antitoxin like) no 0.40
    10 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.67 0.40
    11 PP_0096 oligopeptidase A 0.80 0.39
    12 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.67 0.39
    13 PP_2319 conserved protein of unknown function no 0.39
    14 PP_4124 NADH-quinone oxidoreductase subunit G 0.69 0.39
    15 PP_5064 choline dehydrogenase no 0.39
    16 PP_4121 NADH-quinone oxidoreductase subunit C/D 0.70 0.38
    17 PP_4532 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis 0.73 0.38
    18 PP_0823 Selenide, water dikinase no 0.37
    19 PP_5502 ribosome modulation factor 0.64 0.37
    20 PP_4993 Glutathione synthetase 0.69 0.37

    Or look for negative cofitness