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  • Top cofit genes for PP_5268 from Pseudomonas putida KT2440

    DNA-binding transcriptional repressor PuuR-putrescine
    SEED: Transcriptional regulator, MerR family

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4422 succinate-semialdehyde dehydrogenase (NADP+) no 0.58
    2 PP_2884 XRE family transcriptional regulator no 0.51
    3 PP_4398 Major facilitator family transporter 0.28 0.45
    4 PP_2181 Transcriptional regulator, Cro/CI family no 0.36
    5 PP_3514 5-oxoprolinase B no 0.25
    6 PP_3515 5-oxoprolinase A no 0.21
    7 PP_3516 Transcriptional regulator, AraC family no 0.19
    8 PP_2179 glutamine amidotransferase 0.51 0.18
    9 PP_2586 putative amino acid transporter no 0.17
    10 PP_3300 Transcriptional regulator, tetR family 0.28 0.16
    11 PP_3641 Cytosine/purine/uracil/thiamine/allantoin permease family protein 0.31 0.15
    12 PP_3603 Transcriptional regulator, GntR family 0.24 0.15
    13 PP_3335 conserved protein of unknown function no 0.14
    14 PP_2645 magnesium transporter, ATP-dependent no 0.14
    15 PP_4937 toluene tolerance protein no 0.14
    16 PP_1620 5'(3')-nucleotidase and polyphosphatase no 0.14
    17 PP_4820 tRNA-dihydrouridine synthase B 0.38 0.14
    18 PP_5085 malic enzyme B no 0.14
    19 PP_2350 LysR family transcriptional regulator no 0.14
    20 PP_1253 Transcriptional regulator, ArsR family no 0.14

    Or look for negative cofitness