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  • Top cofit genes for PP_5230 from Pseudomonas putida KT2440

    Tyrosine recombinase XerC
    SEED: Tyrosine recombinase XerC
    KEGG: integrase/recombinase XerC

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1217 Holliday junction ATP-dependent DNA helicase RuvB 0.77 0.54
    2 PP_4004 DNA translocase FtsK 0.75 0.53
    3 PP_5310 junction-specific ATP-dependent DNA helicase 0.82 0.46
    4 PP_1215 Crossover junction endodeoxyribonuclease RuvC 0.80 0.46
    5 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA 0.83 0.46
    6 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.83 0.45
    7 PP_0123 DNA polymerase I, 5 0.61 0.42
    8 PP_1468 Tyrosine recombinase XerD 0.91 0.41
    9 PP_1629 Protein RecA 0.89 0.40
    10 PP_0002 probable chromosome partition protein 0.65 0.36
    11 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.64 0.36
    12 PP_1734 Probable septum site-determining protein MinC 0.33 0.34
    13 PP_1733 membrane ATPase of the MinC-MinD-MinE system 0.30 0.32
    14 PP_4880 exoribonuclease R 0.53 0.31
    15 PP_4943 putative Glycosyl transferase 0.57 0.31
    16 PP_4124 NADH-quinone oxidoreductase subunit G 0.50 0.31
    17 PP_1198 transcriptional regulator, Cro/CI family (higA antitoxin like) 0.51 0.30
    18 PP_4121 NADH-quinone oxidoreductase subunit C/D 0.48 0.29
    19 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.58 0.29
    20 PP_0872 Peptide chain release factor 3 0.47 0.29

    Or look for negative cofitness