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  • Top cofit genes for PP_5175 from Pseudomonas putida KT2440

    HlyD family secretion protein
    SEED: Probable RND efflux membrane fusion protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_5173 RND efflux transporter 0.94 0.20
    2 PP_1755 fumarate hydratase (class 2) 0.31 0.19
    3 PP_3614 conserved membrane protein of unknown function no 0.18
    4 PP_3861 Phage FluMu protein gp46 0.28 0.17
    5 PP_2108 conserved protein of unknown function 0.42 0.17
    6 PP_0574 DNA-binding response regulator, LuxR family no 0.16
    7 PP_2870 putative spermidine/putrescine-binding periplasmic protein no 0.16
    8 PP_1824 Smr domain protein no 0.16
    9 PP_2455 ribose ABC transporter - ATP-binding subunit 0.21 0.16
    10 PP_3399 minor curlin subunit CsgB, nucleation component of curlin monomers no 0.16
    11 PP_1903 putative phosphotyrosine-protein phosphatase no 0.16
    12 PP_2934 conserved exported protein of unknown function no 0.16
    13 PP_1883 protein of unknown function no 0.16
    14 PP_1571 conserved protein of unknown function no 0.16
    15 PP_3208 Oxidoreductase, Pdr/VanB family no 0.16
    16 PP_0848 donor of Fe2+ and regulator of cysteine desulfurase activity 0.52 0.16
    17 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex no 0.16
    18 PP_0805 Outer membrane efflux protein no 0.15
    19 PP_0217 delta-9 fatty acid desaturase no 0.15
    20 PP_3400 alpha-ketoglutarate- and Fe(II)-dependent dioxygenase 0.31 0.15

    Or look for negative cofitness