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  • Top cofit genes for PP_5125 from Pseudomonas putida KT2440

    Formamidopyrimidine-DNA glycosylase
    SEED: Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)
    KEGG: formamidopyrimidine-DNA glycosylase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1061 putative ATP-dependent DNA helicase lhr no 0.18
    2 PP_0216 putative sensory box/GGDEF family protein no 0.18
    3 PP_5305 Epimerase/dehydratase-related protein 0.27 0.17
    4 PP_5233 ammonium transporter AmtB 0.20 0.17
    5 PP_5144 conserved protein of unknown function 0.29 0.16
    6 PP_5651 conserved protein of unknown function no 0.16
    7 PP_3372 CpxR-Pasp DNA-binding transcriptional two-component system regulator 0.31 0.16
    8 PP_2832 galactose-binding protein regulator no 0.15
    9 PP_1740 putative Beta (1-6) glucans synthase 0.36 0.15
    10 PP_4929 Transcriptional regulator, LysR family no 0.15
    11 PP_1703 assimilatory nitrate reductase/sulfite reductase no 0.14
    12 PP_1706 Nitrite reductase 0.44 0.14
    13 PP_4232 Cytochrome c family protein no 0.14
    14 PP_5715 protein of unknown function no 0.14
    15 PP_4221 non-ribosomal peptide synthetase (subunit of ferribactin synthase) no 0.14
    16 PP_4160 K+ transporting ATPase, KdpB subunit 0.28 0.14
    17 PP_0703 putative Transmembrane sensor no 0.14
    18 PP_1517 RND efflux transporter 0.57 0.14
    19 PP_5481 conserved protein of unknown function no 0.14
    20 PP_0923 Acyltransferase no 0.14

    Or look for negative cofitness