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  • Top cofit genes for PP_5113 from Pseudomonas putida KT2440

    predicted Zn-dependent peptidases
    SEED: FIG015287: Zinc protease

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1627 conserved protein of unknown function 0.63 0.61
    2 PP_1798 Outer membrane efflux protein no 0.60
    3 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.56 0.58
    4 PP_0725 conserved hypothetical TPR repeat protein 0.74 0.58
    5 PP_1204 putative Lipoprotein 0.83 0.57
    6 PP_0540 conserved inner membrane protein 0.82 0.57
    7 PP_1774 conserved exported protein of unknown function no 0.55
    8 PP_5058 Carboxy-terminal-processing protease 0.71 0.55
    9 PP_1871 Protease HtpX 0.75 0.55
    10 PP_2148 transcription-repair coupling factor 0.73 0.54
    11 PP_1663 conserved exported protein of unknown function 0.73 0.54
    12 PP_3627 conserved protein of unknown function no 0.54
    13 PP_1777 phosphomannomutase no 0.53
    14 PP_0789 N-acetyl-anhydromuramyl-L-alanine-amidase 0.71 0.53
    15 PP_4198 OmpA family protein 0.85 0.52
    16 PP_5283 periplasmic dipeptide transport protein 0.34 0.51
    17 PP_1803 UDP-sugar epimerase 0.38 0.51
    18 PP_1770 3-phosphoshikimate 1-carboxyvinyltransferase no 0.51
    19 PP_0405 conserved protein of unknown function 0.81 0.49
    20 PP_1626 DNA mismatch repair protein MutS 0.58 0.48

    Or look for negative cofitness