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  • Top cofit genes for PP_5085 from Pseudomonas putida KT2440

    malic enzyme B
    SEED: NADP-dependent malic enzyme (EC 1.1.1.40)
    KEGG: malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0356 malate synthase G 0.72 0.66
    2 PP_4116 isocitrate lyase 0.61 0.66
    3 PP_5659 protein of unknown function no 0.64
    4 PP_4699 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.76 0.50
    5 PP_0248 Probable alpha-L-glutamate ligase 0.51 0.46
    6 PP_4549 long-chain-fatty-acid/CoA ligase 0.22 0.44
    7 PP_2136 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.42 0.43
    8 PP_0368 putative Acyl-CoA dehydrogenase no 0.41
    9 PP_4565 Isocitrate dehydrogenase kinase/phosphatase 0.72 0.38
    10 PP_4550 long-chain-fatty-acid/CoA ligase 0.43 0.37
    11 PP_2137 beta-ketoadipyl CoA thiolase, beta component 0.41 0.36
    12 PP_0691 Glutamate 5-kinase 0.42 0.35
    13 PP_4799 putative Muramoyltetrapeptide carboxypeptidase no 0.35
    14 PP_5015 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) 0.59 0.34
    15 PP_2356 putative Phytochrome family protein no 0.34
    16 PP_2868 Transcriptional regulator, Cro/CI family no 0.34
    17 PP_5095 pyrroline-5-carboxylate reductase 0.43 0.34
    18 PP_3603 Transcriptional regulator, GntR family 0.59 0.34
    19 PP_0370 Acyl-CoA dehydrogenase family protein 0.27 0.34
    20 PP_4700 pantothenate synthetase no 0.33

    Or look for negative cofitness