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  • Top cofit genes for PP_5041 from Pseudomonas putida KT2440

    glycogen phosphorylase
    SEED: Glycogen phosphorylase (EC 2.4.1.1)
    KEGG: starch phosphorylase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4008 ATP-dependent serine protease 0.88 0.54
    2 PP_0396 conserved protein of unknown function 0.63 0.45
    3 PP_0397 protein kinase 0.62 0.45
    4 PP_0395 putative type IV piliation protein 0.64 0.45
    5 PP_4342 flagellar synthesis regulator, putative ATPase 0.50 0.44
    6 PP_0951 Ribosome hibernation promoting factor no 0.40
    7 PP_1319 Ubiquinol--cytochrome c reductase, cytochrome c1 no 0.37
    8 PP_5502 ribosome modulation factor no 0.37
    9 PP_4343 Flagellar biosynthesis protein FlhF 0.22 0.36
    10 PP_1318 Cytochrome b 0.53 0.36
    11 PP_5084 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase 0.25 0.35
    12 PP_4471 Magnesium transporter 0.50 0.35
    13 PP_1364 conserved exported protein of unknown function no 0.34
    14 PP_3649 Transcriptional regulator, GntR family 0.57 0.34
    15 PP_1058 conserved protein of unknown function 0.18 0.34
    16 PP_1778 Lipopolysaccharide ABC export system, permease protein 0.30 0.34
    17 PP_1779 Lipopolysaccharide ABC export system, ATP-binding protein 0.36 0.33
    18 PP_1623 RNA polymerase, sigma S (sigma 38) factor no 0.32
    19 PP_1198 transcriptional regulator, Cro/CI family (higA antitoxin like) no 0.31
    20 PP_4009 ATP-dependent Clp protease adapter protein ClpS 0.53 0.31

    Or look for negative cofitness