Top cofit genes for PP_5006 from Pseudomonas putida KT2440

Transcriptional regulator, TetR family
SEED: Transcriptional regulator PhaD

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_5003		poly(3-hydroxyalkanoate) polymerase 1	no	0.76
2	PP_5005		Poly(3-hydroxyalkanoate) polymerase 2	0.28	0.66
3	PP_1113		Pyridoxal-phosphate dependent enzyme family protein	no	0.37
4	PP_1761		diguanylate cyclase with phosphodiesterase domain	no	0.30
5	PP_2437		putative Acyl-CoA dehydrogenase	no	0.29
6	PP_2144		Transcriptional regulator, TetR family	0.18	0.29
7	PP_5053		Protein-export protein SecB	no	0.28
8	PP_5045		tRNA sulfurtransferase	no	0.28
9	PP_2889		putative Transmembrane regulator PrtR	0.22	0.27
10	PP_4171		conserved exported protein of unknown function	0.52	0.25
11	PP_1112		conserved membrane protein of unknown function	no	0.24
12	PP_5706		Sec translocation complex - SecG subunit	no	0.23
13	PP_5146		RNA pyrophosphohydrolase	no	0.22
14	PP_4333		CheW domain protein	no	0.22
15	PP_5145		phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins)	no	0.21
16	PP_4173		Sensor histidine kinase/response regulator	no	0.19
17	PP_4172		conserved exported protein of unknown function	0.41	0.19
18	PP_3651		Sensor histidine kinase/response regulator	no	0.18
19	PP_4379		Beta-ketoacyl-acyl-carrier-protein synthase I	no	0.18
20	PP_1453		putative NUDIX hydrolase with low 3-phosphohydroxypyruvate phosphatase activity	no	0.18

Or look for negative cofitness