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  • Top cofit genes for PP_5005 from Pseudomonas putida KT2440

    Poly(3-hydroxyalkanoate) polymerase 2
    SEED: Polyhydroxyalkanoic acid synthase
    KEGG: polyhydroxyalkanoate synthase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_5003 poly(3-hydroxyalkanoate) polymerase 1 0.69 0.83
    2 PP_5006 Transcriptional regulator, TetR family 0.27 0.66
    3 PP_1113 Pyridoxal-phosphate dependent enzyme family protein no 0.57
    4 PP_4171 conserved exported protein of unknown function 0.28 0.45
    5 PP_2889 putative Transmembrane regulator PrtR 0.35 0.42
    6 PP_4100 Transcriptional regulator, Cro/CI family no 0.40
    7 PP_1761 diguanylate cyclase with phosphodiesterase domain 0.33 0.37
    8 PP_5053 Protein-export protein SecB no 0.34
    9 PP_3831 conserved protein of unknown function no 0.34
    10 PP_1650 Sensor protein GacS 0.52 0.33
    11 PP_1112 conserved membrane protein of unknown function no 0.33
    12 PP_4099 two-componenent system BarA/UvrY - regulatory subunit 0.51 0.33
    13 PP_4173 Sensor histidine kinase/response regulator 0.37 0.32
    14 PP_2437 putative Acyl-CoA dehydrogenase 0.27 0.28
    15 PP_4050 glycogen synthase 0.79 0.28
    16 PP_0674 ADP/ATP ratio sensor and inhibitor of translation 0.21 0.27
    17 PP_2387 conserved protein of unknown function no 0.27
    18 PP_4172 conserved exported protein of unknown function 0.25 0.26
    19 PP_2231 putative permease of the drug/metabolite transporter (DMT) superfamily 0.26 0.26
    20 PP_1783 dTDP-glucose pyrophosphorylase 0.31 0.26

    Or look for negative cofitness