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  • Top cofit genes for PP_5004 from Pseudomonas putida KT2440

    Poly(3-hydroxyalkanoate) depolymerase
    SEED: Poly(3-hydroxyalkanoate) depolymerase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_5005 Poly(3-hydroxyalkanoate) polymerase 2 0.30 0.24
    2 PP_5003 poly(3-hydroxyalkanoate) polymerase 1 0.32 0.22
    3 PP_1410 conserved protein of unknown function no 0.18
    4 PP_5006 Transcriptional regulator, TetR family 0.40 0.18
    5 PP_4519 Agglutination protein 0.66 0.17
    6 PP_1669 NLP/P60 family protein no 0.16
    7 PP_4604 putative permease of the drug/metabolite transporter (DMT) superfamily no 0.15
    8 PP_0311 putative dimethylglycine dehydrogenase subunit 0.74 0.15
    9 PP_1318 Cytochrome b no 0.15
    10 PP_3727 Amino-acid permease RocE no 0.15
    11 PP_1407 Sulfate transporter no 0.15
    12 PP_1264 putative Fusaric acid resistance protein no 0.15
    13 PP_4143 conserved protein of unknown function no 0.15
    14 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.22 0.15
    15 PP_0168 putative surface adhesion protein no 0.15
    16 PP_1408 (R)-3-hydroxydecanoyl-ACP:CoA transacylase no 0.15
    17 PP_4993 Glutathione synthetase no 0.15
    18 PP_0166 HlyD family secretion protein no 0.15
    19 PP_3092 conserved protein of unknown function no 0.15
    20 PP_0798 GGDEF domain protein 0.22 0.14

    Or look for negative cofitness