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  • Top cofit genes for PP_5003 from Pseudomonas putida KT2440

    poly(3-hydroxyalkanoate) polymerase 1
    SEED: Polyhydroxyalkanoic acid synthase
    KEGG: polyhydroxyalkanoate synthase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_5005 Poly(3-hydroxyalkanoate) polymerase 2 0.59 0.83
    2 PP_5006 Transcriptional regulator, TetR family no 0.76
    3 PP_1113 Pyridoxal-phosphate dependent enzyme family protein no 0.49
    4 PP_1761 diguanylate cyclase with phosphodiesterase domain no 0.40
    5 PP_4171 conserved exported protein of unknown function 0.41 0.35
    6 PP_5053 Protein-export protein SecB 0.36 0.34
    7 PP_1112 conserved membrane protein of unknown function no 0.33
    8 PP_4100 Transcriptional regulator, Cro/CI family no 0.32
    9 PP_2889 putative Transmembrane regulator PrtR no 0.32
    10 PP_2144 Transcriptional regulator, TetR family 0.40 0.27
    11 PP_2437 putative Acyl-CoA dehydrogenase no 0.26
    12 PP_1650 Sensor protein GacS 0.40 0.25
    13 PP_4099 two-componenent system BarA/UvrY - regulatory subunit 0.42 0.24
    14 PP_5004 Poly(3-hydroxyalkanoate) depolymerase 0.32 0.22
    15 PP_2387 conserved protein of unknown function 0.48 0.22
    16 PP_0355 Response regulator no 0.22
    17 PP_5706 Sec translocation complex - SecG subunit no 0.22
    18 PP_3651 Sensor histidine kinase/response regulator no 0.21
    19 PP_1783 dTDP-glucose pyrophosphorylase 0.40 0.21
    20 PP_3831 conserved protein of unknown function no 0.21

    Or look for negative cofitness