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  • Top cofit genes for PP_4994 from Pseudomonas putida KT2440

    conserved protein of unknown function
    SEED: Ferric siderophore transport system, periplasmic binding protein TonB
    KEGG: periplasmic protein TonB

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1898 MotA/TolQ/ExbB proton channel family protein 0.81 0.88
    2 PP_4785 conserved exported protein of unknown function 0.87 0.63
    3 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.26 0.47
    4 PP_1719 Tail-specific protease prc 0.79 0.47
    5 PP_4902 Oligoribonuclease no 0.47
    6 PP_4804 RlpA-like lipoprotein 0.76 0.44
    7 PP_1623 RNA polymerase, sigma S (sigma 38) factor 0.39 0.44
    8 PP_1198 transcriptional regulator, Cro/CI family (higA antitoxin like) no 0.42
    9 PP_1232 conserved exported protein of unknown function 0.87 0.42
    10 PP_4471 Magnesium transporter no 0.41
    11 PP_4008 ATP-dependent serine protease 0.67 0.40
    12 PP_0138 conserved membrane protein of unknown function 0.68 0.39
    13 PP_4880 exoribonuclease R no 0.38
    14 PP_4055 Glycogen debranching enzyme 0.51 0.37
    15 PP_5053 Protein-export protein SecB 0.50 0.37
    16 PP_1058 conserved protein of unknown function 0.29 0.36
    17 PP_0396 conserved protein of unknown function no 0.35
    18 PP_0397 protein kinase no 0.35
    19 PP_4342 flagellar synthesis regulator, putative ATPase 0.58 0.35
    20 PP_0395 putative type IV piliation protein no 0.35

    Or look for negative cofitness