Top cofit genes for PP_4985 from Pseudomonas putida KT2440

16S rRNA m3U1498 methyltransferase
SEED: Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)
KEGG: ribosomal RNA small subunit methyltransferase E

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4946		sodium/L-proline transporter	0.49	0.27
2	PP_4722		Transcription elongation factor GreA	0.67	0.25
3	PP_2169		tRNA-dihydrouridine synthase A	0.87	0.25
4	PP_1226		pre-queuosine 0 synthase	0.29	0.25
5	PP_2088		RNA polymerase sigma factor SigX	no	0.24
6	PP_5294		Ribonuclease PH	0.65	0.24
7	PP_0496		Sodium/alanine symporter	0.61	0.24
8	PP_4710		tRNA pseudouridine 55 synthase	0.86	0.23
9	PP_1370		Glycosyl transferase, group 1 family protein	no	0.23
10	PP_4654		tRNA/tmRNA (uracil-C(5))-methyltransferase	no	0.22
11	PP_1786		putative Glycosyl transferase	no	0.22
12	PP_0123		DNA polymerase I, 5	0.64	0.22
13	PP_2379		putative cytochrome oxidase biogenesis protein	0.48	0.22
14	PP_3957		choline/carnitine/betaine transporter BetTC	no	0.22
15	PP_5337		LysR family transcriptional regulator	0.60	0.22
16	PP_0951		Ribosome hibernation promoting factor	0.72	0.21
17	PP_0185		Positive alginate biosynthesis regulatory protein	0.58	0.21
18	PP_1529		Probable cysteine desulfurase	0.50	0.21
19	PP_1751		methyltransferase/FAD-dependent oxidoreductase	0.64	0.21
20	PP_0594		Transcriptional regulator, TetR family	0.67	0.21

Or look for negative cofitness