Top cofit genes for PP_4980 from Pseudomonas putida KT2440

ATP-dependent RNA helicase
SEED: ATP-dependent RNA helicase RhlE
KEGG: ATP-dependent RNA helicase RhlE

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_2148		transcription-repair coupling factor	0.27	0.41
2	PP_2096		fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase	no	0.38
3	PP_5101		coproporphyrinogen/heterocyclic compound oxidase (aerobic)	no	0.35
4	PP_4726		Chaperone protein DnaJ	0.31	0.35
5	PP_1871		Protease HtpX	0.36	0.34
6	PP_5053		Protein-export protein SecB	0.66	0.33
7	PP_1663		conserved exported protein of unknown function	0.64	0.32
8	PP_4006		Putative arginyl-tRNA--protein transferase	0.29	0.32
9	PP_5283		periplasmic dipeptide transport protein	0.69	0.31
10	PP_1777		phosphomannomutase	0.47	0.31
11	PP_0540		conserved inner membrane protein	0.49	0.31
12	PP_5279		conserved protein of unknown function	no	0.30
13	PP_1145		RNA polymerase-associated protein RapA	0.72	0.30
14	PP_2098		D-alanyl-D-alanine carboxypeptidase	0.27	0.30
15	PP_4766		ATP-dependent RNA helicase	0.26	0.30
16	PP_1523		conserved protein of unknown function	no	0.30
17	PP_1774		conserved exported protein of unknown function	no	0.29
18	PP_2027		conserved exported protein of unknown function	no	0.29
19	PP_3627		conserved protein of unknown function	no	0.29
20	PP_0872		Peptide chain release factor 3	no	0.29

Or look for negative cofitness