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  • Top cofit genes for PP_4968 from Pseudomonas putida KT2440

    DNA ligase B
    SEED: DNA ligase (EC 6.5.1.2)
    KEGG: DNA ligase (NAD+)

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1299 putative amino acid ABC transporter - membrane subunit no 0.18
    2 PP_3839 short-chain alcohol dehydrogenase 0.61 0.17
    3 PP_5558 putative transcriptional xre family of phage origin no 0.17
    4 PP_2118 conserved protein of unknown function no 0.17
    5 PP_0025 hypothetical protein no 0.16
    6 PP_5137 ferric iron ABC transporter, ATP-binding protein 0.36 0.15
    7 PP_2186 putative Formate dehydrogenase, delta subunit no 0.15
    8 PP_4312 conserved exported protein of unknown function 0.71 0.15
    9 PP_0259 purine nucleotidase no 0.15
    10 PP_4972 conserved exported protein of unknown function 0.25 0.15
    11 PP_5242 Sensor histidine kinase/GAF domain protein no 0.15
    12 PP_1893 medium-long chain acyl-CoA dehydrogenase 0.14 0.15
    13 PP_2071 conserved protein of unknown function 0.46 0.15
    14 PP_2025 Exonuclease SbcD 0.51 0.14
    15 PP_1552 putative Phage replication protein no 0.14
    16 PP_1297 putative amino-acid ABC transporter-binding protein YhdW no 0.14
    17 PP_0196 putative of ABC superfamily informational factor: ATP-binding components 0.37 0.14
    18 PP_0557 Acetoin catabolism regulatory protein no 0.14
    19 PP_0593 putative ribosome-binding factor no 0.14
    20 PP_3423 Type II secretion pathway protein XcpT no 0.14

    Or look for negative cofitness