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  • Top cofit genes for PP_4952 from Pseudomonas putida KT2440

    ATP-dependent RNA helicase, specific for 23S rRNA
    SEED: ATP-dependent 23S rRNA helicase DbpA
    KEGG: ATP-independent RNA helicase DbpA

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1797 HlyD family secretion protein no 0.19
    2 PP_1780 putative mannosyltransferase no 0.17
    3 PP_1800 Oxidoreductase Rmd 0.39 0.17
    4 PP_1777 phosphomannomutase 0.35 0.17
    5 PP_1627 conserved protein of unknown function no 0.16
    6 PP_1799 GDP-mannose 4,6-dehydratase no 0.16
    7 PP_1776 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase 0.72 0.16
    8 PP_4842 putative Urea ABC transporter no 0.16
    9 PP_1779 Lipopolysaccharide ABC export system, ATP-binding protein no 0.16
    10 PP_0566 translation-related factor 0.50 0.16
    11 PP_3627 conserved protein of unknown function no 0.16
    12 PP_1803 UDP-sugar epimerase 0.26 0.16
    13 PP_1918 septation protein 0.71 0.16
    14 PP_1801 Glycosyl transferase WbpY no 0.16
    15 PP_4645 Large-conductance mechanosensitive channel 0.54 0.15
    16 PP_1805 Polysaccharide biosynthesis protein 0.53 0.15
    17 PP_2029 von Willebrand factor type A domain protein no 0.15
    18 PP_1807 2-dehydro-3-deoxyphosphooctonate aldolase no 0.15
    19 PP_1802 glycosyl transferase 0.33 0.15
    20 PP_4805 membrane-bound lytic murein transglycosylase B 0.47 0.15

    Or look for negative cofitness